Comprehensive user manual for the MetaGraph framework - a software platform for indexing and analysis of very large sequence collections
Learn how to install MetaGraph using conda, Docker containers, or compile from source with custom build configurations.
View Installation GuideStep-by-step tutorial covering graph construction, annotation, transformation, and querying using both CLI and Python API.
View Quick StartPerform exact k-mer matching and sequence-to-graph alignment for efficient sequence search.
Learn MoreUse Snakemake workflows to automate graph construction and annotation processes at scale.
Learn MoreAssemble sequences from graphs with support for differential assembly and custom parameters.
Learn MoreComplete Python API documentation including sequence search with alignment, k-mer abundance queries, coordinate indexing, and examples for MetaSUB searches and parallel graph queries.
Explore preconstructed indexes for various datasets and use MetaGraph Online for web-based sequence queries without local installation.
This documentation is currently under development. For questions or requests to extend certain sections, please open an issue on GitHub or propose changes via a pull request.