Preconstructed indexes

The large, pre-constructed indexes are available from (For more stable transmission, consider using rclone, which reliably downloads files up to and larger than 1 TB, from the command line.)

MetaGraph Online

MetaGraph Online currently hosts various indexes constructed from SRA runs and supports search and align queries.

To query these indexes using Python API, connect to their respective endpoints. For example, write GraphClient('', 80, api_path='/api/metasub19') to connect to the MetaSUB index.